Tutorials

The first section is focused on single-cell genomics. For general applications in genomics data (HT-SELEX, ChIP-seq, etc.), please refer to the second section (bulk).

Single-cell genomics analysis using mubind

• Dentate gyrus (scRNA-seq) | Training with an RNA-dynamics kNN-graph
• Dentate gyrus (scRNA-seq) | Model evaluation
• Mouse pancreatic endocrinogenesis (scATAC-seq) | Training with an RNA-dynamics kNN-graph
• Mouse pancreatic endocrinogenesis (scATAC-seq) | Model evaluation
• Mouse neurogenesis scRNA-seq (Noack et al. 2022) | Training with an RNA-dynamics kNN-graph
• Mouse neurogenesis scRNA-seq (Noack et al. 2022) | Model evaluation

Bulk data analysis using mubind

• CTCF HT-SELEX (Jolma et al. 2013) | Model training

Troubleshooting

Note Notebooks outputs are provisory while release documentation is updated.

If you find issues while executing the tutorials, or wish to suggest a dataset for a tutorial, please reach out and/or submit an issue at https://github.com/theislab/mubind/issues